The JCII Camera Museum in the Ichibancho area of Chiyoda specializes in cameras. It holds historic Japanese and foreign camera models and traces the development of optical and photographic technology.
The Itabashi Science and Education Hall is a science museum run by Itabashi City. With hands-on exhibits and a planetarium, it is designed to let children and families learn scientific principles.
The Science Tokyo Museum and Archives is the university museum of Institute of Science Tokyo (formerly Tokyo Institute of Technology), presenting its academic research and education. The facility displays historical materials and research-related collections of the university.
The Hayashi Fumiko Memorial Hall is a literary museum in Nakai, Shinjuku ward, Tokyo. It preserves the house where the novelist Hayashi Fumiko spent her later years and displays materials related to her life and work.
The Kume Museum of Art is located in Shinagawa, Tokyo. It centers its collection and exhibitions on the materials and works of historian Kume Kunitake and his son, the painter Kume Keiichiro.
The Tamagawadai Park Kofun Tomb Exhibition Room is located within Tamagawadai Park in Ota, Tokyo. It focuses on the cluster of ancient burial mounds in the area, explaining the structure of the tombs and finds through displays.
The Tokyo Opera City Art Gallery is housed in the Tokyo Opera City Tower in the Nishi-Shinjuku area of Shinjuku. It mounts special exhibitions focused on contemporary art and design and holds the collection of the painter Terauchi Manjiro.

The Panasonic Shiodome Museum of Art is located in the Panasonic Tokyo Shiodome Building in the Shiodome area of Minato. Centered on works by the French painter Georges Rouault, it also holds exhibitions on art, design, and architecture.
The Kachidoki Bridge Museum is dedicated to the Kachidoki Bridge over the Sumida River. It uses exhibits to explain the structure and history of this former bascule bridge and the development of the surrounding Tokyo harbor area.
The Old Shimbashi Station Railway History Exhibition Hall is a railway museum in Minato ward, Tokyo. Housed in a reconstruction of the former Shimbashi Station, the birthplace of Japanese railways, it exhibits materials on the history of Japan's railways.

The Tokyo Kasei University Museum is a university museum within Tokyo Kasei University in Itabashi. It collects and exhibits materials related to home economics, including clothing and everyday culture.